Alignment of DNA, RNA, or protein sequences using Smith-Waterman

Align DNA, RNA, or protein sequences

Match Score Mismatch Score Gap Penalty

Paste the two DNA / RNA/ Protein sequences in the form and hit submit. Alignment is results shows sequences with matches and mismatches are shown which you can copy.

The alignment method is by Smith-Waterman (Smith, T. F., & M. S. Waterman. 1981. Identification of common molecular subsequences. Journal of Molecular Biology 147:195-197. PubMed)

I give give credits to Dr. Jose Manuel González Hernández for developing original code of Smith-Waterman Algorithm from which l got the inspiration.